RnoEX0057364 @ rn6
Exon Skipping
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56356704-56365329:+
Coord C1 exon
chr3:56356704-56356838
Coord A exon
chr3:56364939-56365043
Coord C2 exon
chr3:56365230-56365329
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTACCTCCTTTCCAGCTG
3' ss Score
9.26
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GACGTGGATGAGGAGGTGGAGGCTGAATACAACATTCTGCAGTTTCTCCCCAGCCATCCCAATGTTGTAAAGTTTTATGGGATGTTTTACAAAGCTGATCGCTGTGTGGGAGGGCAGCTGTGGCTGGTTCTGGAG
Seq A exon
CTGTGTAATGGGGGCTCCGTCACTGAGCTTGTCAAGGGCCTCCTGAGGTGTGGTAAGCGGCTGGATGAAGCTCTGATCTCCTACATTCTGTATGGATCCCTCTTG
Seq C2 exon
GGCCTTCAGCACTTGCACCATCACCGAATCATCCACCGAGATGTGAAGGGGAATAACATTCTTCTGACGACAGAAGGAGGAGTTAAGCTCGTTGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.5=100)
A:
PF0006920=Pkinase=FE(12.7=100)
C2:
PF0006920=Pkinase=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGGATGAGGAGGTGGAG
R:
AAAGTCAACGAGCTTAACTCCTCC
Band lengths:
234-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]