MmuEX6100415 @ mm9
Exon Skipping
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31450363-31452171:+
Coord C1 exon
chr2:31450363-31450412
Coord A exon
chr2:31450770-31450841
Coord C2 exon
chr2:31452114-31452171
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTCGTTTCATTGCAGTTA
3' ss Score
8.23
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCAGTAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTA
Seq A exon
TTATTGGCAGGGGAGGTGAGCAGATTTCACGAATTCAAGCAGAATCTGGGTGCAAAATTCAGATTGCCTCAG
Seq C2 exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-'6-10,'6-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.400
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTAATAACAGAAGAATTCAAAG
R:
ACTTTCTGGGGTTCCGGTAAG
Band lengths:
103-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: