HsaEX6063525 @ hg19
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133487843-133489732:+
Coord C1 exon
chr9:133487843-133487892
Coord A exon
chr9:133488343-133488414
Coord C2 exon
chr9:133489675-133489732
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTCAATTTGTTTCAGTTA
3' ss Score
8.35
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTA
Seq A exon
TTATCGGCAGGGGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCTTCAG
Seq C2 exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.400
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGTAATAACGGAAGAATTCAA
R:
ACTTTCTGGGGTTCCGGTAAG
Band lengths:
103-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)