BtaEX6046798 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100929031-100930938:+
Coord C1 exon
chr11:100929031-100929080
Coord A exon
chr11:100929416-100929487
Coord C2 exon
chr11:100930881-100930938
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCCGGTTTCATTTGTTTCAGTTA
3' ss Score
8.23
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCAGTAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTA
Seq A exon
TTATCGGCCGGGGAGGTGAGCAGATCTCGCGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCGTCAG
Seq C2 exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.333
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTAATAACAGAAGAATTCAAAG
R:
ACTTTCTGGGGTTCCGGTAAG
Band lengths:
103-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]