RnoEX0037104 @ rn6
Exon Skipping
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10239387-10243199:-
Coord C1 exon
chr3:10243150-10243199
Coord A exon
chr3:10242713-10242784
Coord C2 exon
chr3:10239387-10239549
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTCATTTCATTGCAGTTA
3' ss Score
7.91
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCAGTAATAACAGAAGAATTCAAGGTGCCTGATAAAATGGTTGGATTTA
Seq A exon
TTATTGGCAGGGGAGGTGAGCAGATTTCACGAATTCAAGCAGAATCTGGGTGCAAAATCCAGATTGCCTCAG
Seq C2 exon
ACAAGCCAAACGGCTCCTGGGGCAGATTGTGGACCGATGTCGGAATGGGCCTGGCTTTCACAACGATATAGATGGCAACAGCACAATCCAGGAGCTTCTTATCCCTGCATCTAAAGTGGGGCTGGTCATCGGCAAAGGAGGGGAAACAATCAAGCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.091
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAATTCAAGGTGCCTGA
R:
GACCAGCCCCACTTTAGATGC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]