GgaEX1025674 @ galGal4
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5925778-5928497:+
Coord C1 exon
chr17:5925778-5925827
Coord A exon
chr17:5927554-5927625
Coord C2 exon
chr17:5928440-5928497
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTGAACTCATTTCAGTAA
3' ss Score
3.5
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGCTGTAATAACAGAAGATTTCAAAGTGCCTGATAAAATGGTTGGATTTA
Seq A exon
TAATCGGCAGGGGAGGTGAGCAGATCTCACGGATTCAGATCGAGTCTGGCTGCAAAATTCAAATTGCTCCAG
Seq C2 exon
ACAGTGGCGGGATGCCTGAAAGGCCCTGTGTGCTCACCGGGACGCCAGAGAGCATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
80%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.640
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATAACAGAAGATTTCAAAGTGCC
R:
CAATGCTCTCTGGCGTCCC
Band lengths:
103-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]