GgaINT0124186 @ galGal4
Intron Retention
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5925778-5927625:+
Coord C1 exon
chr17:5925778-5925827
Coord A exon
chr17:5925828-5927553
Coord C2 exon
chr17:5927554-5927625
Length
1726 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
GCTTGTTGAACTCATTTCAGTAA
3' ss Score
3.5
Exon sequences
Seq C1 exon
GGCTGTAATAACAGAAGATTTCAAAGTGCCTGATAAAATGGTTGGATTTA
Seq A exon
GTAAGTACCTTGCATGCTTTTGGTATGGTTCTTCTGTGCAGGAATGCTGCATATTCTGCTAGAATAAGGCATGATCACAAGTTTTTGTGCTTGCTAGCCTTGGGTGAGCCTTGTCTGATGCTCTCTTTTTGGGACCACATCATCTGCATTTAAAATTCAGGTGCAAACAGCATGGAAAAGCTTGGTGTCGCAGTAATGAGAACAAGTCTGCGTGGTACAGGTTACCAAGAACTCTAGTGGTTCTGTTCTTTAAACATGCTGCATAAATATATCAAAAGTGAATTCATTTCCCCTCATTGAAACATTTTACTTTTGAGTATGCAAAAGTGTGGGAGGTGAGGGAGGAAAACAATATTTAAATGTTAAAACAAGACTTGACTCAAGGCAAGATAAGAAGAATTTTGAATCTTTCATACCTTTGCTGCAGGGGAACACAGCCAGTATGCGTTCCTCAGCTGAGGTTTTTTCCCTAGGCTCGTGTTCTTGGTGCTGTTCTCTTCTAAGCTTTATTTTAATTCCTCTCTTCCTTTTGATCATCATTACTCGTTCTTTCAATGGCACCCTCCTGCTGTTGTGACTGCAGAGATTGCATTTACTCTTCCACTGTTACGTATCTGTGCATCTCTCCCAATTTGATATACAGAGAGGAAAAAAAGAAAATAACAGCCCAAGATAATTACCCCTTAGGGTGGTATGAAGCCTTTTCCTAACTGTACACTGTAAAACTGTAACTCTGGAATTCCTGAGAAGGAAACCTGTCCTCCCACCAACCCTTTTTATTTATCTGTCCTGGTACCACATGTGTGGAGGCAAGGAAGTCAGAGGGGTTTTATAGCTGGATGAGATGGGACGCTGCATACTGATGCATCATCTGTGTATTAAATACAGTCTGGGTTCAGCAGCAACCAGGTGCGGGAGGGGGTTCTGATCCATAGAATCATGGAATGGCTTAGGTTGGAAGGGACCTCAAGGATCATTAAGTTCCAACCCCCATGCCACAGGCAGGGCCACCAACCTCCGTGCTTAATACTAGACCAGGCTGCCCAGGGCCCCATCCAACCTGGCCTTGAATACCTCCAGGGAGAGCTGGGAGGTTCTTCTGCAGGAGCACCTTGAGCCAGGCATACCTGTTCGACTTGACAGTTCTGCTCTTTTGCAGTCTGCAAAGGATATGAGTGGTGATAGACACACTGAAGAGAGACAGTGTGTGCCTGTTTGTGAAACAACTGTTTGCTGACCCTAAATGTTAAGGGAGATGGGTATTTGTTTTCACTTAAGATTTGATAGAGCGTTTTGGTGTGTAGCAGTTTTGAGTGCAGACTGGAGAAATAGCATGTCTTTTGAAAAGAGGTAGTAAAACATGAATTTTGAAGATATAAAAGCAAAAGTCTTTAGCTTTTTTAGGTTCTCAAATAACTGGTTTATTTGTTTGGGTTGAAATACACCTAAATGTCTCTCCTAGCAGCGCTCAGACTTGCGCCTTCTTTCTTACATATTATGTATCTCCATTCCAGTGCAAGACAGAGTTGTTTTTTTGTTGATTTCCTTTTTGCTTGTTTTGTTTTGGTTTGTTTTTTAAATGTTATCATACTGTGGATGCCTCTTCTACAATCCTGTAGTCAAACTGTACCTTTATAGAGAGCTGCAACGGAGTGGTAGGGGGGAAGTTGCTCTGCAGTTTTTCGGGATAAGCAGCGTGTGCTGATGCTTGTTGAACTCATTTCAG
Seq C2 exon
TAATCGGCAGGGGAGGTGAGCAGATCTCACGGATTCAGATCGAGTCTGGCTGCAAAATTCAAATTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941:ENSGALT00000039554:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
NA
C2:
PF0001324=KH_1=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]