DreINT0011650 @ danRer10
Intron Retention
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:857099-858704:+
Coord C1 exon
chr5:857099-857148
Coord A exon
chr5:857149-858632
Coord C2 exon
chr5:858633-858704
Length
1484 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
AACTATATTTTTGTGTGCAGTTA
3' ss Score
6.55
Exon sequences
Seq C1 exon
GGCTATAATAACAGAAGACTTCAAAGTGCCTGATAAGATGGTTGGATTCA
Seq A exon
GTAAGTATTGCAGATGAGGATTCATTCATTTATTATTGTGGAAACACATGGGCTTTACGATCAAATGGCTCTAACAGGGTCCCCGCGGGGTCTTAAAAAGTATTAAAGTCTTAAATAAAAAAATCTAAATTCCTTAAATTCTAGGTCTTAAATATTTTTGCACAGGTCTTATTTTTGCGATGTCCATGTAACGCTACATCTAATGCTCATTTAAATTATTTTTGTTGTTGTTGCTTGGTTTTTGGGGTGTTGTAGTTCATTATTTCACAAGTCCAATTGTAATTTGCGATATTACAACTACAAAAAAGTCAACTTGCAATAGCCAATCAGCTTTGTGTTATTAAACTCAGTGCGCGTGGCGAATGTGACGTCATCGCTGTGTTTGCGGAAGTTCGATTTGAGTGCGCGCGACATTATTTCGGCTGGCAGAGTATGCCGTTATTTCACTGACACATGTCGCAAGCGCAGTTTTATAAGTCGGGAGCGTTGTAATGCGAGAGAGCGAAATTTAAATAACTTTATTTTACCCCTAATTTTGTGCTTTTACATTTTCTCTCGCGTGTTTTTGATATTGCGATATAGGTCTTAAATTTAATACTTAATGGTCTTAAAAAGGTCTTAAAAGGTCTTAAATTTTACATTATGAGACCCTGTCTAATTGTTTAATATGAAATACTGCTTTTAAATTACCCCATTAATTAGATTAAATATGCATAAAAGAATTAAAATGCATTTAAATACCTTTATTTGCAAATGAATATTCAGAATGCACTAATTTTGCAATAATCTTATTTTGGTTTGTATTTCTTTTTTACAAATTTGAACAGAACATGGTACAAATCTGAAAACATATAAGCAGCTTGTAGATTAAAATTGGCTTATTTACTGGAACTTTGACTTCCTCAATTCAGCAAATGTTTAAAGACGTGTTTGAAAGTTTTGTTTTTATAAATAACAAATATATTCATATCCATATCACCCATTACTAATCTGAATACTTTTTTATATCATTAAAAGGAGATTTCACTCTTATATTTTAATTATTTGACGTTTTTTTATGTTATATTCTTGTTATATTTTATTTGTTAATACCGAATCACATAATTATAACTGTTATTTTGTGGATAAATTTCTCAGTATTTATGAGAGTTTATTTATGATTTAGTTATTTAATCAGCACACAATGTAATTAGTGATTATTTTTTTTAAATGTAATCCTTTACTCAGCATTTAATACATGCACTTTTTGGTGTAGTTTATATTTATATATAATCTATTTCAGTCATTCACTCTTTAGTGTAACAGGCCAGCTTGCCCATTTTGTTGTTACATCACAACTTCCTGTATTTTGGTTATTACATGTTTTTATTTTGTGCTCTCGGTGGTTTGCTGAATGTCTACATCATCGTTTTTGTGCATCGTTAGTTTCAAAACGAGAACAATTTAATAGTGAACAAAATATAAAACTATATTTTTGTGTGCAG
Seq C2 exon
TTATTGGACGGGGCGGCGAACAGATCACCAGAATTCAGCTGGAATCCAACTGCAAGATCCAGATCGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896:ENSDART00000166336:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
NA
C2:
PF0001324=KH_1=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]