RnoINT0062962 @ rn6
Intron Retention
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10242713-10243199:-
Coord C1 exon
chr3:10243150-10243199
Coord A exon
chr3:10242785-10243149
Coord C2 exon
chr3:10242713-10242784
Length
365 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
CCCTGCTCATTTCATTGCAGTTA
3' ss Score
7.91
Exon sequences
Seq C1 exon
GGCAGTAATAACAGAAGAATTCAAGGTGCCTGATAAAATGGTTGGATTTA
Seq A exon
GTAAGTATCTGAATTGCTTTGTGCTTAACTCTTGTCTGTTCTGTTTACCTTTTAATTCTTGTCTGTTCTATTCTCTTATGAGCGTGTCACCTGTGGTAGCATGCTGGGGCAGTGCTGCAGGCATTGCAGTAGCTGCGTCTGAACGGCAGGGCATCTGGCCACCCTAGCTATTCTTGACGCAGCTGAAGTAGTTACCTGCTGTGTGTCCCATGCAGCTTCTGTTGCTGTGGTGTCTGTGGGCTGACACGGGCTCCCCAGAGGACGGCTTAGAGTGAGCTGTGAGCGAGAGTGAATGTTTGCTGAGTTAGTTAAGCTAGAGTGTGGAAAGGAGGAGGCATGGTCTGACCCTGCTCATTTCATTGCAG
Seq C2 exon
TTATTGGCAGGGGAGGTGAGCAGATTTCACGAATTCAAGCAGAATCTGGGTGCAAAATCCAGATTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139:ENSRNOT00000021871:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
NA
C2:
PF0001324=KH_1=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]