MmuINT0066474 @ mm9
Intron Retention
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31450363-31450841:+
Coord C1 exon
chr2:31450363-31450412
Coord A exon
chr2:31450413-31450769
Coord C2 exon
chr2:31450770-31450841
Length
357 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
CCCTGCTCGTTTCATTGCAGTTA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GGCAGTAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTA
Seq A exon
GTAAGTATTGCCTTTTTCCTTAACTCCTGTCTGTTCTTGTCTGTTAGACTCTCTTATGAGCATGTCACCTGTGGTAGCCTGCTAGGGGGACTGTTGCAGGCATCGTGGTCAGTATCATCTGAACATCAGAGTACTTGGCCACCCCTAGCTATGCTTGCCAAGGCCGAAGTCGTTACCTGCTGTGTGTCACATGCATCGTCTGTTGCTGTGACGTCCATGAGCTGAGAGGACTCCCCAGAGGTTGGCTTATAGTGAGCTGTGAGCAGAGTGTAAATGTTTGCTGAGTTAATTAAGCTATCCATGTGTGCTTATGTGTGCAAAGGGGGGCACCTTCTGACCCTGCTCGTTTCATTGCAG
Seq C2 exon
TTATTGGCAGGGGAGGTGAGCAGATTTCACGAATTCAAGCAGAATCTGGGTGCAAAATTCAGATTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-Fubp3:NM_001033389:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
NA
C2:
PF0001324=KH_1=PD(30.0=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: