HsaINT0066561 @ hg19
Intron Retention
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133487843-133488414:+
Coord C1 exon
chr9:133487843-133487892
Coord A exon
chr9:133487893-133488342
Coord C2 exon
chr9:133488343-133488414
Length
450 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
CCCTGTTCAATTTGTTTCAGTTA
3' ss Score
8.35
Exon sequences
Seq C1 exon
GACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTA
Seq A exon
GTAAGTATCCATGTTGTCTACTTTTTCCCTGATTCCTGTCTCTTCTTTTTCTCTCTTTTTTTCTGAGCTGCTTTGCCAGGATGTTCTTTTTGTTTTAATCTCTCTTGTGAGTATCACCTGTAGTAGAATGCTTTGCACATGCCATTCCCCACAGCTCTGAAATGCTGCAGGTCTCTTCAGGCTGAGGGAGAAACCAGAGCACTGGACTGTGGATGTCCCTCCCTTCCCCACCTCTCCCCACCTCAGCTCAGATCCCCTCTGCCTGTAGGCTGTTTCACAAGGGCTTTCTGCTGCCATCATGCCCAAAGAGTGGAGATGGGCTCACGGGGGCCAACTCGATGTGTAGTATTGTGAGCCAAGTGTCACAGTTTGTGGAATTAATTCAGTCATTCCTGCGTGGTGAAATATGGAATAGGGGCGTGTATTCTGACCCTGTTCAATTTGTTTCAG
Seq C2 exon
TTATCGGCAGGGGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTGGTTGCAAAATTCAGATTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-FUBP3:NM_003934:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
NA
C2:
PF0001324=KH_1=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)