DreEX6008863 @ danRer10
Exon Skipping
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:857099-858962:+
Coord C1 exon
chr5:857099-857148
Coord A exon
chr5:858633-858704
Coord C2 exon
chr5:858905-858962
Length
72 bp
Sequences
Splice sites
3' ss Seq
AACTATATTTTTGTGTGCAGTTA
3' ss Score
6.55
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCTATAATAACAGAAGACTTCAAAGTGCCTGATAAGATGGTTGGATTCA
Seq A exon
TTATTGGACGGGGCGGCGAACAGATCACCAGAATTCAGCTGGAATCCAACTGCAAGATCCAGATCGCTGCTG
Seq C2 exon
ACAGCGGTGGTATGATGGATCGGCCCTGCACCCTGACCGGGACCCCAGAGAGTATCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.450
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATAACAGAAGACTTCAAAGTGCCT
R:
TCGATACTCTCTGGGGTCCCG
Band lengths:
103-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]