MmuEX0028694 @ mm9
Exon Skipping
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71350183-71360687:+
Coord C1 exon
chr2:71350183-71350225
Coord A exon
chr2:71353694-71353857
Coord C2 exon
chr2:71360590-71360687
Length
164 bp
Sequences
Splice sites
3' ss Seq
AAATGTGTGCCTGTGTTTAGGTC
3' ss Score
8.84
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
Seq A exon
GTCTATTACAATGGCTACCATGGAGACACCTCTGAAACCTTTCTGGTGGGCAATGTGGATGAAAGTGGTAAAAAGTTAGTGGAGGTTGCCAGGAGGTGTAGAGATGAAGCGATTGCAGCCTGCAGAGCTGGGGCCCCCTTCTCTGTAATTGGAAACACAATCAG
Seq C2 exon
CCGCATAACTCATCAGAATGGTTTGCAAGTCTGTCCACATTTTGTGGGACATGGGATAGGATCATACTTTCATGGACACCCAGAAATTTGGCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921_MULTIEX2-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(16.1=100)
A:
PF0055719=Peptidase_M24=FE(23.7=100)
C2:
PF0055719=Peptidase_M24=FE(14.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACCTCTTCAGGATGGAGA
R:
GATGCCAAATTTCTGGGTGTCC
Band lengths:
138-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: