BtaEX6009048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019075 | MAP1D
Description
Bos taurus methionyl aminopeptidase type 1D (mitochondrial) (METAP1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001046342]
Coordinates
chr2:24514932-24525503:-
Coord C1 exon
chr2:24525461-24525503
Coord A exon
chr2:24521829-24521992
Coord C2 exon
chr2:24514932-24515029
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACATTTCTGCCTGTGTTTAGGTT
3' ss Score
10.52
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
Seq A exon
GTTTACTACAATGGCTACCATGGAGACACCTCAGAAACATTTTTGGTGGGCAATGTGGATGAATGTGGTAAAAAGTTAGTGGAGGTTGCCAGGAGGTGTAGAGATGAAGCAATTGCGGCTTGCAGAGCGGGGGCTCCCTTCTCTGTCATTGGAAACACAATCAG
Seq C2 exon
CCAGATAACTCATCAGAATGGTTTGCAAGTCTGTCCACATTTTGTGGGACATGGGATAGGATCTTACTTTCATGGACATCCAGAAATTTGGCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019075-'13-12,'13-9,15-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(6.1=100)
A:
PF0055719=Peptidase_M24=FE(23.7=100)
C2:
PF0055719=Peptidase_M24=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCTCTTCAGGATGGAGA
R:
TGATGCCAAATTTCTGGATGTCCA
Band lengths:
139-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]