RnoEX0053957 @ rn6
Exon Skipping
Gene
ENSRNOG00000061587 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:RGD Symbol;Acc:1307413]
Coordinates
chr3:58147032-58159334:+
Coord C1 exon
chr3:58147032-58147074
Coord A exon
chr3:58150678-58150841
Coord C2 exon
chr3:58159287-58159334
Length
164 bp
Sequences
Splice sites
3' ss Seq
AAATGTGTGCCTGTGTTTAGGTC
3' ss Score
8.84
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
Seq A exon
GTCTATTACAATGGCTACCATGGAGACACCTCCGAAACCTTTCTGGTGGGCAATGTGGATGAAAGTGGTACAAAGTTAGTGGAGGTTGCCAGGGCGTGTAGAGACGAAGCAATCGCAGCCTGCAGAGCTGGGGCCCCCTTCTCTGTAATTGGAAACACAATCAG
Seq C2 exon
CAAATGACAACGATCTGCCCATGGAGGAGCGCATGGCTTTCACCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061587_MULTIEX2-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(6.1=100)
A:
PF0055719=Peptidase_M24=FE(23.7=100)
C2:
PF0055719=Peptidase_M24=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACCTCTTCAGGATGGAGA
R:
ATGGTGAAAGCCATGCGC
Band lengths:
89-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]