RnoEX0000450 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr3:58149236-58163450:-
Coord C1 exon
chr3:58163011-58163450
Coord A exon
chr3:58150654-58150819
Coord C2 exon
chr3:58149236-58149980
Length
166 bp
Sequences
Splice sites
3' ss Seq
GATTGTGTTTCCAATTACAGAGA
3' ss Score
7.53
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGCAGCGGCTCCTGCCTGCAGATTTCCTCTTCTGATTAAAGGCATGAGGCTGAAACATTTCATGCAGCATCTTGGTTGGAGCAAAAGAGAAAAACAAAAAAAGAGGAAAAAAACCAAACCAAACCAAACCAAACCAAACCAACCAACCAAACAAACAAACAAAAAAACAGTCCAAAATCTGTAAACCAATAAAGGGTTTGCCAACGCCTGAGAAAGGTTTTTATTTTTACTTAATCGCCGAACCACACGGTGAGGCTTTGTAGCACCAACCAACTAAGAACGCCAACTCTGCTCGTCCTGGTCTTCATGTCGTATTCGTGATTTTAATTGCTCCTCCTTAGCGCCTGTTTTGGGGTGTGGAGTGTCGTCCTGTGCGCCCAACGGAGCCGCTTGGATGCCATCTGAACCGAAGGTCTCTTCGCCTTGCGGGCCTTGCCCAT
Seq A exon
AGAAGGGGGCCCCAGCTCTGCAGGCTGCGATTGCTTCGTCTCTACACGCCCTGGCAACCTCCACTAACTTTGTACCACTTTCATCCACATTGCCCACCAGAAAGGTTTCGGAGGTGTCTCCATGGTAGCCATTGTAATAGACCTAAACACAGGCACACATTTTAAG
Seq C2 exon
AAGCGCCATGTGATTTTGAACGACATCGGGCTCATCATGAGAGACCAATGATTACAGCACCAGAGCACATGGAGGGGGCAGAGGAGACTGGTTGGCTGTTGACCCTTGGACACCATGTGGCATTTACTGTTTTGCATAAACTTAGCCCATCTAATTATCTTCACGGTTCCCCTTTTCCTGAGGTGAACACAGGGACTCTGAGAAGATCTGTTTATTTAAGCTTTGTCTGAGTTAATGTCATACCCATCGCCATCAGGCAATGAAGACCATGTTCTCCTGGGCAGCAAGAAGATGATGCAAAAGGCTTCACAGAGATCGCTGGCTTTTAAGTCAGGAAACTGAGGCAGAGACAAATAAAGTGTGCGGGTTCCTGACAGAGGAGAAAGGTACATCCCAACCAGTCTGGTAGACTGATGGCTTCTTAATCCCCCCACGGTACAGCCATGCTTGCTAATTCATTCCCACTTACATTCCCTTCCAGAAAAATGTAAGCTTTTGTC
VastDB Features
Vast-tools module Information
Secondary ID
Rn.169298_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTGCTCGTCCTGGTCTT
R:
AACAGCCAACCAGTCTCCTCT
Band lengths:
256-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]