RnoINT0091644 @ rn6
Intron Retention
Gene
ENSRNOG00000061587 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:RGD Symbol;Acc:1307413]
Coordinates
chr3:58150678-58158022:+
Coord C1 exon
chr3:58150678-58150841
Coord A exon
chr3:58150842-58157924
Coord C2 exon
chr3:58157925-58158022
Length
7083 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTCGTTTGGTCCCTTTAAAGCCA
3' ss Score
5.51
Exon sequences
Seq C1 exon
GTCTATTACAATGGCTACCATGGAGACACCTCCGAAACCTTTCTGGTGGGCAATGTGGATGAAAGTGGTACAAAGTTAGTGGAGGTTGCCAGGGCGTGTAGAGACGAAGCAATCGCAGCCTGCAGAGCTGGGGCCCCCTTCTCTGTAATTGGAAACACAATCAG
Seq A exon
GTAAGCCTTGCACTGATGAGAAAAAGGAGGGTCGGCGAATGGCAGAAAGGTTATTGGTGGCTCGGTATAAAGCCGATGACATGTTTTATGATCCACAGCTATCATTCAGTCTGATATCAGCATGTGAACTGCCAGGCTGCAATATTGTTCCCTGGGTTTTAAAAAAAATGGCTTAAAAAAAGTGAATTTTGACCAGGGTCAGCTGGGAAACCTACTGGAGCAGTGAGCAGTATTTATATGACTGCCTTTGTTTTAGCTTGACATGTTGGTCTGTGATGCTCTTTTATTCAAATGGGAAAGAAGGTACCTAAGAAGTGGCTGATGGTCCCAGCCCTTGGATGTGTGAGAGAGGAGAAAAAAAAAAAACCATTCTATAAAGGAATGAAGGGAGGCACCCCTGTGATACAGAGCTCAGAGGTGTGAGCTAAGATTTAGAAATAGCCCGAGAGGCTGCTCTGTGTCCCTTTCCCTCTGGGCCGGTTTTTTTTTTCTCTCTCTAAAACACTGTTTACTTTCCCAGAGTTTCTCTGTGCTTTGCTTTTAGAGTGTGAGTGTATTTTCTGAATTCAAGACTTTTCTTTGTAATCTGTTCCCCGCTTTCAGATCTTTTTTTTTTACCCTAAATGTTTTGAAGTAGACGTGCAGAATATGTGTTTTCATTTAAAAGTAACACATTTTGTTAAAGATGTTCGGCCTTTAAAGTGCTGCTCTCATTAATCTGAGCCTGAGTCTTTTGAATGCATCCCGTTTGCCCAAAGGAAGGAAAGCTTAGTCACCTTGAAAAGATGCTGCCTTTTTCTCTGAGTACGCCTTCAAATACTTTAAGAAAAAAGGCAGTAAAATATCAGTTAAATGTATTTATGGCTTTAAAAATATTGTAACAGTGTCTGAATCAAACTTTAGTAAAATCTCTTTGGGTTATATCTGAGAAGCTTTTATTGAAGACTTTGAACAAAATTGTGTTTTTGACAGTTTTAAATTATAGGCTAACTAGCCTGGGAAAAAAGGATAGTGTCTCTCCGTCCTTTCACAGGAAATGTTGAATCAGACCCCTACTGGGAAAAGAAATTTAATGCATATCTCACTATCTTACTGTCCACGAATATAATAGAAATGAATTCAAAATGCAGTTTTATTTTTGCAAATGGGATGAGTCGATAGATGCACCTCATATTTTTGAACACCTAGGGTTCAACAGATTTACTGGTGGCGCTCTTGCATTTTAACAAAATTTATTCTTCAGTCGAAGGGGGCAGAGAACACTAGATTCTTATTCAGGCATTCTGTGGAGCTCTGCATTCATGGCTGTGTCTAAAGGGCATGTCAGCCTTTGATTCTCTCTGAGAGGTAATTATCCTTTTCCTGTCACGGAACAACAAATGATAGCTAACTACAGAGGCGCATTTGCAGTAGTCACATTCATCAACCGCAGGAAAAAAAATTCAATTTAATTGTACAACACAGCTGCACATGGGCTTTCGAGCTTCTGTTGTTCTCCCTGTCTTGCCATTCCTCCCTCCAGATCTATTTTTTAAACTTTTTTTTTCTGGTTATTTTTTCCCCCTTTTTTTGTCTCTTCTTCCATTTTTACTCTCTGTACTTTCTTGTTAAAGTAATTTTCCTTTGTGGCTCTCATTCTTCTTTCCCCATTGAAGGCTATGAATGTAGAAAATTATCACAATTACTCATATAATTGAGCCTCTTTGTAGCAAGTGCAACTCCAGTAGCCTTTCTCCATCATGAAAATGGTTTCATTATAGGGTTTTTCATATTCCCTGACACCATCTACACAGAGGAGCAGGCGTGCAGATGAGATGTACTGAGAACAGGCTAGATCAGTAGGTCACAGTAGGAATAATTAGCTCTTCTATGGAAAGAGCATCCAGGCCTTTTACTGCTACATAAATGTACTGTCCGTGGCTTTTAGCCACAAAAAAACTTACTAACAAATGGAGCTCCCGCCTACTACTTTGAAAAAAAGATTTGTATCAACACTACAATTTTCCATCATTAAGACTAATAACACAGAGCCTAGTATACATCAAGGGGAATAAAGAGAAAAATCTCACATCCAAGTGGTGGCTGGGCGCTGACCTTTGTTCCCTCTTTTTGTATACGACTTAACTCTTTACAAAAAGGAGCCACACGCCACACCAACATGCAGGTGAACTCCAGCTAGTACTCGCAAAGCACAGCATTCAGTCGGAAAATCTGATAAATCTCCATGCAGGATAATGCATTTCATTACATATTCACTACATTAATTCCTGCCACATTAAAAAAAAAAAAAAAAGCAACGGAGAAGAAGAGTGGAATTCAAAGTGGCGTTGGATTTTAGCTATCTGGACTCCAAGGTCAGTTTGGGCAGAGTATGAATTTGCATGAACAGGCTTCTTTGAAAACCAGATCAGCCCCAACAACTATACCCAGAGAACTCTGTGCAAAATAACAGACAATGAACTTTTTACTCTTACCCTAATGCGTTTCATTATTTGGATAGTTTATGTCTGCCGCTGGCGAGGAGGCCGGCCCCGATTCTGACAAATGTTTGTCCTGGTGTATTACAGCAGTATTTCTGGACATCTATTGTTTTCGCCTTTTCTTATTCAGGGGGAAAAAATCTTTAAGGAGTAAATAAACAAATGAGATCCACCCTCGAGCCAAGAAGTACTTAATATCTTTACAGACCAAAGGTTTACAAACAACTTTCAACTGGGTCTCCTTTCTTTAAGACAGTCACTCGCCATCTGCCGTAGCCTCCATCTACTGATAGCCTCTGAGAACACACAGGCAACTCACACTTCTTGAATGCTACCCCAAAGCCTGAGGTCCCTAAAATTTGAAATCCTGCTCAGAAACTTAAAGAACACAGGGGTGTCTCTGAAGAAGTGTCAGTTAATGTGATTTCACAAAGACAGTTTTCTGTGTGCCCTTTGCCCTGTGAGCGACTCCCAGTGATCTCTAGGCTATGATGCTATTATACCTGCTCTCTAACCACATTTGCTCCACAGTAATCTCTGTGTTACCCGGATGTGTGAGAAGAACATGAGCATGGGGCTACATGCATCACTAGTCGATGACAGTTCGCTCCAAAATAATTTAAACTTACACTTGGAGATGTCACGATGAAGCTATCAATAAATGGGTTTTTTAATGTTTAATTCATAAGTATATATTTTGATATTAATTTAGAACAATACAAAGCAGTTTTTTTTTAGAAAAATAATCTCTTTCTATTAGATTATGCACATTTAAACAATAAGTGGCTCAGGCAAAATAAGTCATTTTAATGTCATCTGTGATGGATTTTGCTTGACAGCTACTGTAAATTACAATTACACCGCGTCTCTCTGCACATGAAAGTAAGCATTGCAATAAATTATCTTTTATTTCAATCCATCATGTCTGCTTTTCAGAAACAGAGAACCTCAAATAAAAGTTCAGCACTATTGTAAGAAAAATATAGTAATTTGTGATCCAGCTTGAAACAAAAAATAAAATGTCCCACTGTATTGGAAAACAGTAACAACAGGCTTTTAAAAATATGACTAATTGTACTTAAACATTCCTGTCATTAGAGGGGGTCCCTGGCTTTGTACATTCCTCCATTTAGAGGCTACTGTTTGGACTGAAAACCTGGGAAGAGTAAAGTGGAATTCCATAACTGCCTTTTGGGATCCCTGCCTCTGGAGAGATGAGGGCCTTTGGAGCTCGGTCTCCCGGGAGTCATCTGAAAGTGCTAATGAATCCATTCTTTCTTTAAGAGTGTGTGCTTAACACAGCACTCCTCTGCCCTCTTGGGGAATGCAGTCTTAGTCACATAAATTACTTGAAATGTGTTAAGAAGTTGTATTTATTTAGTTGTAATATTTATTATACAATATTAAGAGGTGTCTAACTGCTTCACATAAATGGAATTAAACTGAAGAAAAAAAGTTACAGGAAGCTCCTTAAAGGAAGTTTCTCTTCCACCTATAACCTGTAACTGAGCCACAGACAGTCACGATACAGTATGATTAAAAAGTGAGTTTGAAAGCTGCCTTTACACAGCTCTCCCCCAGCATTCTCTCTGAAAGCCATCCGGTCATGGCTGTGTGGGTCTCATGACCAGACATTGCCCTGCCTTAAAGGATTTTAGCTAGAGAAAATCAGAACAGAAGAGCCAACACCTGGAGAGTTATTTTCTTTTCTTTTCTTTTTTTTTTTTCTTTTCTTTTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTGCCAGGCAAGCGCTCTACCGCTGATCTAAATCCCCAACCCGAGAGTTATTTTCTATAGATTTCAACAAGAAAAAAACGTTTCATCTGTGAAATATTCAGGGCAAGAAAACAATTAAGCTGAGAGACAGCAGTGGTTCTATGACGCATTGGTGTTGGGGAGCAATTGCCTGACTTCTCAGGGTCCGCTGGCTCCCCAACCCAACATTGAGTGCACAGCCCACCTTCCTATTGCCGCGTCAGGGTGACCGGCACCAACTTTCCACTGAAGAAGTAGAATTTGATTTCCTTTGTCATTTGGATTGTCTTTCCAAAATCAGATTTAAGTTCCGCGGCCAGGAGAAGAGTCTGGGCTCAACGCATGTTCCAAAGTAGTTGAACGTGCATGTTTTCAAAGTGATTGAGAACATTAATGGAATTTTACCTCACCTAAGTGTATGTTGAAAGGTACAAGTGAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGTGCAAGGCCCTGGGTTCGGCTCCGAAAAAAAAGAAAAAAAAAAAAGAGAAAAGTACAAGTGAACAGAAGTGCGTCCTTAGCTTCCGGGAACCGAACATGTTCAACCAGAGAACGGAGGGGAATGTGCTGAGACACACATCCCCCCCTCCGCCCCAGCTATGAAATCCTTCAGCATCTGCATATGTGACACAGATTCTAGGTTACCATAGCAGAGGCTCCATCAGGATCCAGAGAGCGAATTGTGCAGGAGAAGGCACTCAAATGTCTTTAGTTACTTAGTGGTTGTAGAGCCTCTTTCCTAAGGAGGAAGAAGAGATATGAAGTGCGGGTGGGGAGACCCCCAAGGGATTTTTAGAGTGGCCTTTCTTCTCCTCTCATTGGAAATCAAAATGAAGATTACCATTGTCACACGTTAGGTGTGGCCATGAAGCCTTCCAATCAGTTGGATCATTGGTGGAAAAATAGATAGATAAATAAATAAAACTAGTATCTTATTTTATTATATGTTTTAAGAAAATACTAGCTGGGGTGTTGTGGCGTATGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAAGTGGATCCCTGAGTTCGATACCAGCCTTGTCTACAAAGTGAGTTCCAAGATAGCCAGGGCTACACAGAAAAAACCTGCATCCCAACCCAAAACAAAAACAACAATAAATGAATAAACACTAGAACGGTTTATGTTGAAATGCTTTTCAAATGATTGAGGTTTGCTAGAACTGAGCTTAACAACTTATGGGCGTTAAGAGAACTCATTCTCATGTAGGAAAAAAAATCCTAATTCAAGCTTTCGTGAGTTATCTAATTATCTTTTTCCTCCGTCTCCTCTCTGTACTCTGGTTTATGTGTGGTGTGGAACTAAGAGAGACTCCGTGGGGAAGATGTTTTCCAAAAACCACCTCCCGGTCAAAGCCCAGGGTCTGCAAAGCAGCCTGGACCCCAAGGCCCAGCTCCAGAGAAGAAGACCGGCTTCTCTCCATGGACTTGCTTAGCATATCAGTTTCTGCCCTACTGGTTGCATCAAAATTAAATTTCTATGCAGTGCTGCCTCTCTGCTGGTTACAAGGACATCCTGGTCTAAGTGGAGATCCTTACAAATCTGGGAGTGCTTTAAAAATGTCCTTAAAACTTAACCCCGGGGAACGGTGGCACATGCACGTGAGATTGGTGAATTCAGAGGCAGCTGAACAAAAAGTTTTCAGAAGTGTATGGAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCTCGAGGCCCTGGGTTCGGTCCCCAGCTCCTAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAAAGAAAGAAGTGTATGGAGATGTGATGGCTCATGAAGGTGTTAGCCAAAAGGGTCTGTGTGAAGCTGAACTAGAGTCTGTTAGAGATGAGTCTGAGAACTAAAACCTTTGGATGTGGTAGGTTCCATGAACTCCTGCCCACAGCTGTGGGGAGCACTCCAGGCACCCCGCCCTCTGCCTGCATGAAAATACAAATTGTTAGTGTTGTATGCCTTGTTAAGGAGCTGTCTCTCCCAAAATAACCAGATTCCCCTGATCTCAATAAGAGCAAAGCTGTCCATCCTTGCAGGGAGGATTTCAGGGTTGGATCCTATGTGCCTGGTTACCTCTGTAAGGGATAGATAGAACCCAAAATGTCTGCATTTACAGGTCCAGGTTCAGTATTGATGCATTCAAATATCATTGCTATCAAAAAATATTTGCTCGTGAACTTTGCTAATGATAGGTATCTTAAATGGAACCCTAAAATAATCACCATTTCCGAAAGAAAGTAGACAAAACAATCTTTTGTGTCCATTTATAAAATGTTTAGCACTTTTATTAGATGAGGGTTCAAGAAATCATAAAAGTAGAAAGTCATACTTGGAGATCATAATTTTCTCCGTCTAATACCTGGGTTACTAGTAACTGAACAGTCCTTGATCCACAAAGCCATCCAAACCAGGTAAGTTTGGGACCCTCTGTTACAGACGTGTGTGCTTGCACCTCCCTTGTGTATGTCAGGGTACATTTGTACGTATGTATACTCATTTGTCGCCTGAGAGCGAGCTTTGTTAAAAGTACTTTGTGTATCTACAGGGACTGCTAGCAAGCATCAGCCGGCACTAAAATTATTCTGGAATGAAGGCAACATTCATGCCATTATCAGACTTGAAATAGACCTGATTTTTTTTCAGAGACTATTTTAAGTGATTTTATTTTTAATCTTAATGTGCACTAAAACATTTGATTAAATTAGATGTCGTTTGGTCCCTTTAAAG
Seq C2 exon
CCACATAACTCGTCAGAATGGTTTGCAAGTCTGTCCACATTTTGTGGGACACGGGATAGGATCGTACTTTCATGGACATCCTGAAATTTGGCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061587:ENSRNOT00000084797:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(23.7=100)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]