DreEX6031988 @ danRer10
Exon Skipping
Gene
ENSDARG00000019715 | metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
Coordinates
chr1:30158599-30161123:+
Coord C1 exon
chr1:30158599-30158641
Coord A exon
chr1:30158750-30158913
Coord C2 exon
chr1:30161026-30161123
Length
164 bp
Sequences
Splice sites
3' ss Seq
AGTCAATATGTATTCTGTAGGTT
3' ss Score
5.32
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TCGGCCATTGCAGGATGGTGATATCATCAATATTGATGTCACA
Seq A exon
GTTTATCTGGAAGGTTACCATGGTGACACCTCAGAGACATTTCTGATTGGCTCAGTCAACGACCAGGGCAGGAAATTAGTGGATGTGGCTCGTCAATGCAGAGATCAAGCCATCGCCGCCTGTGGCCCGGGACAACCTTTGTGCGTCATTGGCAACATCATCAG
Seq C2 exon
CAATATAGCAAACTCAAATGGATTTCGTGTATGTCCATATTTTATTGGCCATGGGATCGGAGAATATTTCCATGGACATCCAGAGATATGGCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019715-'8-12,'8-9,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(6.1=100)
A:
PF0055719=Peptidase_M24=PD(11.1=56.2)
C2:
PF0055719=Peptidase_M24=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATTGCAGGATGGTGATA
R:
ATGATGCCATATCTCTGGATGTCC
Band lengths:
138-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]