GgaEX0014056 @ galGal3
Exon Skipping
Gene
ENSGALG00000009513 | F1P5C7_CHICK
Description
NA
Coordinates
chr7:19249806-19260905:-
Coord C1 exon
chr7:19260863-19260905
Coord A exon
chr7:19257286-19257449
Coord C2 exon
chr7:19249806-19249903
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACATTTCTGCATGTGTTTAGGTG
3' ss Score
8.07
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
Seq A exon
GTGTATTACAATGGCTACCATGGTGACACTTCTGAAACCTTTTTGGTGGGCAGTGTGGATAAATCTGGTCAAAAGTTAGTGGAGGTTGCCAGGAAATGTAGAGATGAAGCAATTGCAGCTTGCAGACCAGGGGCTCCCTTCTCTGTAATTGGAAACACAATCAG
Seq C2 exon
CTCTGTGGCGCAGAGGGGCGGCTTCCAGGTGTGCCCCTTCTTTGTCGGCCACGGCATCGGGTCGTACTTCCACGGGCACCCCGAGGTGTGGCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(6.1=100)
A:
PF0055719=Peptidase_M24=FE(23.7=100)
C2:
PF0055719=Peptidase_M24=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCTCTTCAGGATGGAGA
R:
GTGCCCGTGGAAGTACGAC
Band lengths:
122-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]