MmuALTA0017629-1/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000014873 | Surf2
Description
surfeit gene 2 [Source:MGI Symbol;Acc:MGI:98444]
Coordinates
chr2:26772948-26774575:+
Coord C1 exon
chr2:26772948-26773051
Coord A exon
NA
Coord C2 exon
chr2:26774449-26774575
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTGCCTGCCTTCTACACAAGAGG
3' ss Score
1.31
Exon sequences
Seq C1 exon
GCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAATAAGTCCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGAGGTATCAGAGAGCACTTCATCAAT
Seq A exon
NA
Seq C2 exon
AGGAAGAAGAGAGAGGACCAGACGAACAGTGATGAACTCCCAGGCCAGAGAACAGGTTTCTGGGAGCCAGCTTCCAGTGACGAGGAAGACGCCTTGAGTGACGACAGCATGACAGACCTATACCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014873-2-6,2-5,2-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.677
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(13.8=100)
A:
NA
C2:
PF054776=SURF2=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTCCCCAGAACACGTGCT
R:
GGCTCCCAGAAACCTGTTCTC
Band lengths:
133-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: