MmuALTA0002556-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000047617 | BC029214
Description
cDNA sequence BC029214 [Source:MGI Symbol;Acc:MGI:2442831]
Coordinates
chr2:25315335-25315594:-
Coord C1 exon
chr2:25315529-25315594
Coord A exon
chr2:25315380-25315435
Coord C2 exon
chr2:25315335-25315379
Length
56 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAATCTTTCCATGTGGACAGAGT
3' ss Score
3.91
Exon sequences
Seq C1 exon
CTGCAGAAGAGACCATCACTAGCCCCAAGAAGAACACCCAGCCAGCAGGCACTCAGTTCTTACCAG
Seq A exon
AGTTCTGGCCAGGGTTCTTTGGAGTTCAAGATTTCCCTGATCCTATTTTCTGGCAG
Seq C2 exon
AACTTGATCACCAGAGAGGCAGCTCTGGGCCTGGGGTCAGGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047617-8-11,8-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=NA C2=0.932
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(11.2=100)
A:
NA
C2:
PF153841=DUF4610=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGACCATCACTAGCCCCA
R:
CTGACCCCAGGCCCAGAG
Band lengths:
100-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: