MmuALTA0002556-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000047617 | BC029214
Description
cDNA sequence BC029214 [Source:MGI Symbol;Acc:MGI:2442831]
Coordinates
chr2:25459815-25460074:-
Coord C1 exon
chr2:25460009-25460074
Coord A exon
chr2:25459860-25459915
Coord C2 exon
chr2:25459815-25459859
Length
56 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAATCTTTCCATGTGGACAGAGT
3' ss Score
3.91
Exon sequences
Seq C1 exon
CTGCAGAAGAGACCATCACTAGCCCCAAGAAGAACACCCAGCCAGCAGGCACTCAGTTCTTACCAG
Seq A exon
AGTTCTGGCCAGGGTTCTTTGGAGTTCAAGATTTCCCTGATCCTATTTTCTGGCAG
Seq C2 exon
AACTTGATCACCAGAGAGGCAGCTCTGGGCCTGGGGTCAGGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047617-11-14,11-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=NA C2=0.932
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(11.2=100)
A:
NA
C2:
PF153841=DUF4610=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGACCATCACTAGCCCCA
R:
CTGACCCCAGGCCCAGAG
Band lengths:
100-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types