MmuEX0007427 @ mm9
Exon Skipping
Gene
ENSMUSG00000047617 | BC029214
Description
cDNA sequence BC029214 [Source:MGI Symbol;Acc:MGI:2442831]
Coordinates
chr2:25314970-25315594:-
Coord C1 exon
chr2:25315529-25315594
Coord A exon
chr2:25315295-25315379
Coord C2 exon
chr2:25314970-25315221
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTATTTTCTGGCAGAAC
3' ss Score
8.69
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGCAGAAGAGACCATCACTAGCCCCAAGAAGAACACCCAGCCAGCAGGCACTCAGTTCTTACCAG
Seq A exon
AACTTGATCACCAGAGAGGCAGCTCTGGGCCTGGGGTCAGGAGACGGTGTCCAGGGGAGTCTCTCATTAACCCTGGCTTCAAAAG
Seq C2 exon
TAAGAAACCAGCTGCTGGTGTAGACTTTGATGAGACCTGAGGACAGCAAAGCCTGTTACTTGGCCAGGAGCCTGCCTGCAAGGAAAGGGGAGATCTAGGACCCCCTAATCAGAGACACCCCTTGCTTCACTTCCCCTGTGGTCCTGCTGTTGGGCAAAGGTGCCTCTCATCCCTTCTCCGTCAAATAAACTGCTCCCTCGGGGAGAGATGCTAGGCCAGACTTGAGTTGTGAAGATTGGCCTTGGGGAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047617-'8-12,'8-11,10-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.913 A=0.971 C2=1.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(11.2=100)
A:
PF153841=DUF4610=FE(14.2=100)
C2:
PF153841=DUF4610=PD(5.6=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCCCAAGAAGAACACCCA
R:
TGAAGCAAGGGGTGTCTCTGA
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types