BtaEX0005965 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015081 | C11H9ORF142
Description
Bos taurus chromosome 11 open reading frame, human C9orf142 (C11H9orf142), mRNA. [Source:RefSeq mRNA;Acc:NM_001100300]
Coordinates
chr11:106231444-106232054:-
Coord C1 exon
chr11:106231980-106232054
Coord A exon
chr11:106231738-106231822
Coord C2 exon
chr11:106231444-106231640
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCCCCCTCCTGTTTCCCCAGACC
3' ss Score
11.47
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
CTGCTGCAGCGGAGGAGACGGCCACCAGCCCCAGGAAGAGCGCCCGGCAGGCGGGGCCTCGTCTCTTCTTACCAG
Seq A exon
ACCCAGATCCTCAGAGAGGTGGCCCCGGACCTGGGGTCAAGAGGCGGTGTCCAGGGGAGTCTCTCATCAACCCCGGCTTCAAGAG
Seq C2 exon
TAAGAAGCCGGCAAGTGGTGTAGACTTTGATGACCCCTGAAGGCACCACGGAAAGTGTGACGTCAGGACTGTGCCTGCGAGGAGAGGGCAGGGGCGGCCCCCAGGACCTCCTGCCGGCACCTGCCCAGCCTGCTGCCAGGCCGAACAAGGCCACTCCTCTAGCCCCTTCCCCGTCAAATAAACAGCTTCATCTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015081_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(20.8=100)
A:
PF153841=DUF4610=FE(23.3=100)
C2:
PF153841=DUF4610=PD(9.2=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTCGTCTCTTCTTACCA
R:
CCTTGTTCGGCCTGGCAG
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development