DreEX0001628 @ danRer10
Exon Skipping
Gene
ENSDARG00000078807 | C5H9orf142
Description
chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:HGNC:27849]
Coordinates
chr5:24581789-24583492:+
Coord C1 exon
chr5:24581789-24581839
Coord A exon
chr5:24583060-24583150
Coord C2 exon
chr5:24583252-24583492
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGACATCTTTCCATTTTAGAAT
3' ss Score
10.99
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
GTGCTTCCTCTTCATTTAGTCCAGGCAAAGGTTATCAGAAGAGGAGTGCTG
Seq A exon
AATTTGAACCTAAAAAGCAGCATAAGGGTCCAGTAGTAGCAGTTAAAAAACGTCTTCCTGGAGATTCTCTCATCAACCCAGGAACAAAAAG
Seq C2 exon
GAAGAAACCTGCAACAGGTGTGGCGTTTGATGATGAATGATGTCAATGTAGCGTCCAGATTTTAATAAGTATCAATTATTAGTTTTTATCAAACCCAATTTTTTTTTATTTTCAACTTGCAAAGCATGAAAACAGCCGTTTTTAATCATCGTGCATCTATTTAAGCTTTTATTAAATGCAACTGCAGAATGATTTTTAATGTATTTTTAAACTATGTTGCTAATAAACATATATATATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078807-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.472 A=0.790 C2=1.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(9.1=100)
A:
PF153841=DUF4610=FE(16.0=100)
C2:
PF153841=DUF4610=PD(5.9=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAGGCAAAGGTTATCAGA
R:
ACGGCTGTTTTCATGCTTTGC
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]