HsaEX6064139 @ hg19
Exon Skipping
Gene
ENSG00000148362 | C9orf142
Description
chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:27849]
Coordinates
chr9:139887795-139888428:+
Coord C1 exon
chr9:139887795-139887863
Coord A exon
chr9:139888032-139888116
Coord C2 exon
chr9:139888218-139888428
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCTGTTTTCCCCCAGACC
3' ss Score
12.89
5' ss Seq
GAGGTACCC
5' ss Score
7.84
Exon sequences
Seq C1 exon
CTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCGGCCTGCAGGGCCTCAGCTCTTCTTACCAG
Seq A exon
ACCCAGATCCCCAGAGAGGTGGCCCTGGACCTGGAGTCAGGAGGCGGTGTCCAGGAGAGTCGCTCATCAACCCCGGGTTCAAGAG
Seq C2 exon
TAAGAAACCAGCTGGTGGCGTGGACTTCGATGAGACCTGAAGGTGCAGCACAAGCGTGGCCCCGCGGGGAGTCCGCCTATGAGGGGAGAGGCAGTCTTTGAGGCCCCCATCAGAGACCCCCCGCCACCACCTCCACCTGCCTGTCCTGGGCCAGGACTAACACGGCTCCTCAAATTCCTTCCCTGTCAAATAAACAGCTCCCTTGGTTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148362-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(11.6=100)
A:
PF153841=DUF4610=FE(14.1=100)
C2:
PF153841=DUF4610=PD(5.6=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGCCCGAGGAAGAGC
R:
CTCTGATGGGGGCCTCAAAGA
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)