RnoEX0063640 @ rn6
Exon Skipping
Gene
ENSRNOG00000015294 | Paxx
Description
PAXX, non-homologous end joining factor [Source:RGD Symbol;Acc:1306215]
Coordinates
chr3:2678956-2679587:-
Coord C1 exon
chr3:2679522-2679587
Coord A exon
chr3:2679282-2679366
Coord C2 exon
chr3:2678956-2679207
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTATTTTCTGGCAGAAC
3' ss Score
8.69
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCACAGAAGAGACCGCCATTAGCCCCAGGAAGAGCACCCAGCCAGCAGGCACTCAGTTCTTACCAG
Seq A exon
AACTTGATCACCAGAGAGGCAGCTCTGGGTCTGGGGTCAGGAGACGGTGTCCAGGGGAGTCTCTCGTCAACCCTGGTTTCAAAAG
Seq C2 exon
TAAGAAACCAGCTGGTGGTGTAGACTTCGATGAGACCTGAAGCTAGCAAAGCCTGTGTGACCTTGCCAGGAGTCTGTCTGCAAGGAAAGGGGACATCTAGGACCCCTAACCAGAGACACCCTTTGCTTCACTTCCCCTGTGGTCCTGCTGATGGGCAAAAGTACCTCTCATCCCTTCCCCATCAAATAAACTGCTCCCTTGGGGAGAGATGCTAGGCCAGACTTGACTGGTGAAGGTTGGCCTTGGGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015294_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(11.2=100)
A:
PF153841=DUF4610=FE(14.2=100)
C2:
PF153841=DUF4610=PD(5.6=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTAGCCCCAGGAAGAGCAC
R:
AAGGGTGTCTCTGGTTAGGGG
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]