MmuALTA0002556-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000047617 | BC029214
Description
cDNA sequence BC029214 [Source:MGI Symbol;Acc:MGI:2442831]
Coordinates
chr2:25315335-25315594:-
Coord C1 exon
chr2:25315529-25315594
Coord A exon
NA
Coord C2 exon
chr2:25315335-25315379
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGATCCTATTTTCTGGCAGAAC
3' ss Score
8.69
Exon sequences
Seq C1 exon
CTGCAGAAGAGACCATCACTAGCCCCAAGAAGAACACCCAGCCAGCAGGCACTCAGTTCTTACCAG
Seq A exon
NA
Seq C2 exon
AACTTGATCACCAGAGAGGCAGCTCTGGGCCTGGGGTCAGGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047617-8-11,8-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=NA C2=0.932
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(11.2=100)
A:
NA
C2:
PF153841=DUF4610=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGACCATCACTAGCCCCA
R:
CTGACCCCAGGCCCAGAG
Band lengths:
100-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: