MmuINT0109727 @ mm9
Intron Retention
Gene
ENSMUSG00000034738 | Nostrin
Description
nitric oxide synthase trafficker [Source:MGI Symbol;Acc:MGI:3606242]
Coordinates
chr2:69013564-69013885:+
Coord C1 exon
chr2:69013564-69013662
Coord A exon
chr2:69013663-69013759
Coord C2 exon
chr2:69013760-69013885
Length
97 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TGCTTTTCCCGGTGTTCCAGTGC
3' ss Score
7.73
Exon sequences
Seq C1 exon
AGCATGCTGGAGCTGGAGAAGGAAAGAATTCAACTTTTATGCAATAACTTAAACCAGTACAGCCAACATATTTCTCTTTTTGGACAAACGCTGACCACA
Seq A exon
GTGAGTAGTGGAGACCTGTTTCTGGTTATGCGCGGTAGGTAAGGCTGGCAGGAATCAGTTCTTCAACCACCCCACTCTGCTTTTCCCGGTGTTCCAG
Seq C2 exon
TGCCACACACAGATCCACTGTGCCATCAGCAAGGTTGATGTTGAAAAAGATATCCAGGCTCTAATGGAAGAAACTGCAATCCTGTCTATAGAAAACAAATCGGAGCTTCTCCTGGCTGACTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034738-Nostrin:NM_181547:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGAGCTGGAGAAGGAA
R:
AGACAGGATTGCAGTTTCTTCCA
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: