BtaINT0102833 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010362 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:27335302-27335623:-
Coord C1 exon
chr2:27335525-27335623
Coord A exon
chr2:27335428-27335524
Coord C2 exon
chr2:27335302-27335427
Length
97 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TGCTTTCCTTGGCCTTGCAGTGC
3' ss Score
9.1
Exon sequences
Seq C1 exon
AGCATCCTGGAGCTGGAGAAGGAAAGAATTCAACTCTTATGTAATAACTTAAACCAGTACTCCCAACATATTTCTGTTTTTGGCCAAACCTTGACCACA
Seq A exon
GTGAGTAGTAGAGAATTTGCCGTCTCTGGTGTGCATGGTAAGAACTGGCAGGAAACATGTCTTCTGCAACCTTGTTCTGCTTTCCTTGGCCTTGCAG
Seq C2 exon
TGCCACACACAGATTCACTGTGCCATCAGCAAGATAGACATCGAAAAAGATATCCAGGCTCTCATGGAAGAAACCACAGTCTCATCTACAGAAAATAAATCCGAGTTCCTATTAACTGACTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010362:ENSBTAT00000013682:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF087426=C8=FE(47.1=100)
A:
NA
C2:
PF087426=C8=PD(10.3=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGGAGCTGGAGAAGGA
R:
GGTTTCTTCCATGAGAGCCTGG
Band lengths:
172-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]