HsaINT0114791 @ hg19
Intron Retention
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169707594-169707914:+
Coord C1 exon
chr2:169707594-169707692
Coord A exon
chr2:169707693-169707788
Coord C2 exon
chr2:169707789-169707914
Length
96 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TGTTCCCCTTGGCATTGCAGTGC
3' ss Score
6.62
Exon sequences
Seq C1 exon
AGCATTCTGGAGCTGGAGAAGGAAAGAATTCAACTTTTATGCAATAACTTAAACCAGTACAGCCAACATATTTCTCTTTTTGGCCAAACCCTGACCACA
Seq A exon
GTGAGTAGAGATGATCTCTCCATTTCTGGTATGCCTGGTAAGAAGGGGCAGAAACCTTTCTTCGACAACCTTATTCTGTTCCCCTTGGCATTGCAG
Seq C2 exon
TGCCACACGCAGATTCACTGTGCCATCAGCAAGATTGACATTGAAAAAGATATCCAGGCTGTAATGGAAGAAACTGCAATTTTATCTACAGAAAACAAATCTGAGTTCCTGTTAACGGATTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072-NOSTRIN:NM_001171631:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(55.4=93.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCTGGAGCTGGAGAAGG
R:
TGCAGTTTCTTCCATTACAGCCT
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)