RnoINT0102201 @ rn6
Intron Retention
Gene
ENSRNOG00000006611 | Nostrin
Description
nitric oxide synthase trafficking [Source:RGD Symbol;Acc:727920]
Coordinates
chr3:55417291-55417611:+
Coord C1 exon
chr3:55417291-55417389
Coord A exon
chr3:55417390-55417485
Coord C2 exon
chr3:55417486-55417611
Length
96 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TGCTTTTCTTGGTGATCCAGTGC
3' ss Score
5.13
Exon sequences
Seq C1 exon
AGCATGCTGGAGCTGGAGAAGGAAAGAATTCAACTTTTATGCAATAACTTAAACCAATACAGCCAACATATTTCTCTTTTCGGACAAACGCTGACCACA
Seq A exon
GTGAGTAGTGGAGACAGCTCTGTTTCTGGTGTGCACGGGGAGGTTAGCGGGAATCAGTTCTTCAATCACCCCACTCTGCTTTTCTTGGTGATCCAG
Seq C2 exon
TGCCACACACAGATCCACTGTGCTATCAGCAAGGTTGATGTTGAAAAAGATATCCAGGCTCTAATGGAAGAAACTGCAGTCCTGTCTTTAGAAAACAAATCGGAGCTTCTGCTGGCTGACTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006611:ENSRNOT00000067161:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGAGCTGGAGAAGGAA
R:
ACAGGACTGCAGTTTCTTCCA
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]