MmuEX0012316 @ mm9
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:27881113-27888344:+
Coord C1 exon
chr2:27881113-27881225
Coord A exon
chr2:27884487-27884555
Coord C2 exon
chr2:27888111-27888344
Length
69 bp
Sequences
Splice sites
3' ss Seq
CATCCCTGCCCTATGTGTAGGCC
3' ss Score
7.47
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCGAATACTGGGTCGATCCCAACCAAGGGTGCTCCAGGGACTCCTTCAAAGTCTACTGCAATTTCACAGCTGGAGGGTCCACGTGCGTCTTCCCTGACAAGAAGTCTGAGGGA
Seq A exon
GCCAGAATCACTTCTTGGCCCAAAGAAAACCCAGGTTCCTGGTTCAGTGAATTCAAGCGTGGGAAACTG
Seq C2 exon
CTCTCCTATGTGGATGCTGAAGGCAACCCCGTGGGCGTGGTACAAATGACCTTCCTGCGGCTGCTGAGCGCCTCTGCCCACCAGAACGTCACCTACAACTGCTACCAGTCCGTGGCCTGGCAGGATGCCGCCACAGGCAGCTATGATAAGGCTATCCGCTTCTTGGGCTCCAACGATGAGGAAATGTCTTATGATAACAACCCCTACATCCGTGCCCTGGTGGATGGCTGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'64-66,'64-64,65-66
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(10.4=100)
C2:
PF0141013=COLFI=FE(36.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCAGGGACTCCTTCAAA
R:
TGTAGGTGACGTTCTGGTGGG
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: