GgaEX0003207 @ galGal4
Exon Skipping
Gene
ENSGALG00000002546 | COL5A1
Description
collagen alpha-1(V) chain precursor [Source:RefSeq peptide;Acc:NP_990121]
Coordinates
chr17:7553665-7558849:+
Coord C1 exon
chr17:7553665-7553777
Coord A exon
chr17:7554971-7555039
Coord C2 exon
chr17:7558616-7558849
Length
69 bp
Sequences
Splice sites
3' ss Seq
CATTGCCGTCCACAAACTAGGCT
3' ss Score
3.77
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGAATACTGGGTGGATCCTAACCAAGGATGTTCCAGGGACTCTTTCAAAGTGTACTGTAATTTCACAGCTGGTGGAGAGACTTGCATCTTCCCTGATAAGAAGTCTGAAGGA
Seq A exon
GCTAGAATTACTTCTTGGCCAAAGGAAAACCCAGGCTCCTGGTTCAGTGAATTCAAGCGCGGTAAACTG
Seq C2 exon
CTCTCCTATGTGGATTCGGATGGGAACCCCATCGGAGTGGTACAGATGACGTTCCTCAGGCTGCTGAGTGCCTCGGCCCACCAGAACATCACTTACAACTGCTACCAGTCCGTAGCCTGGCACGATGCCACCACTGACAGCTACGACAAGGCCATCCGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTACGACAACAACCCCTACATCCGAGCTGCATTCGATGGCTGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546_MULTIEX1-1/3=C1-3
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(10.4=100)
C2:
PF0141013=COLFI=FE(36.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGACTTGCATCTTCCCTG
R:
GTAGCTGTCAGTGGTGGCATC
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]