RnoEX0023393 @ rn6
Exon Skipping
Gene
ENSRNOG00000008749 | Col5a1
Description
collagen type V alpha 1 chain [Source:RGD Symbol;Acc:70920]
Coordinates
chr3:6568351-6571377:+
Coord C1 exon
chr3:6568351-6568463
Coord A exon
chr3:6570756-6570789
Coord C2 exon
chr3:6570886-6571377
Length
34 bp
Sequences
Splice sites
3' ss Seq
CATCCCTGCCCGATGTGTAGGCC
3' ss Score
5.24
5' ss Seq
CAGGTTCCT
5' ss Score
0.18
Exon sequences
Seq C1 exon
GCGAATACTGGGTCGATCCCAACCAAGGGTGCTCCAGGGACTCCTTCAAAGTCTACTGCAATTTCACAGCTGGAGGGTCCACGTGCGTCTTCCCTGACAAGAAGTCTGAGGGA
Seq A exon
GCCAGAATCACTTCTTGGCCCAAAGAAAACCCAG
Seq C2 exon
AGTAAAATGGCCCGCTGGCCCAAAGAGCAGCCTTCCACCTGGTATAGTCAGTACAAGCGGGGTTCCCTGGTAAGTGGCCGCCTCACGCTGCCTGCTTGCGGCTCGGCCTGGCTCTGGGTGCTGCATGGGCCTAATTGCAGCTGGGACCACACCTGCTATTGCCCTTTCGGCCAAAGTGCTCCACACGCCTGGCAGCAAGGCCCGGATGGGTGTGATTCCCCTTCCTCTTGCCTCTTCTTCCCCCCAGACCAGAGTTCCTTCCCTCCTGGAGGTAGGCAGGGAGCTTTCCACTGAGTTTCAGGGCATCTGCAGTTGGAAGCGGGCAGTCCAGTAAAGCCGCATTGCCGCTTATGGGTGGCACAGCTTGGCTGGCAAGCCACAGGTCAGAGACATGCACAGAGCAGGAGAACCTTCACAAGGTCCTGGGCGTGGCCCATTAGGAGGCTCACAGAGAGTATTCCAGACCCTGCGGTTCACACCCTCTTCCTGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008749-'91-78,'91-77,92-78
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.476 C2=0.143
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(14.3=100)
C2:
PF0141013=COLFI=PD(26.7=24.5)
Main Inclusion Isoform:
ENSRNOT00000086352fB3410
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCAGGGACTCCTTCAAA
R:
CAGGTGGAAGGCTGCTCTTTG
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]