GgaEX0003207 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8235364-8240548:+
Coord C1 exon
chr17:8235364-8235476
Coord A exon
chr17:8236670-8236738
Coord C2 exon
chr17:8240315-8240548
Length
69 bp
Sequences
Splice sites
3' ss Seq
CATTGCCGTCCACAAACTAGGCT
3' ss Score
3.77
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGAATACTGGGTGGATCCTAACCAAGGATGTTCCAGGGACTCTTTCAAAGTGTACTGTAATTTCACAGCTGGTGGAGAGACTTGCATCTTCCCTGATAAGAAGTCTGAAGGA
Seq A exon
GCTAGAATTACTTCTTGGCCAAAGGAAAACCCAGGCTCCTGGTTCAGTGAATTCAAGCGCGGTAAACTG
Seq C2 exon
CTCTCCTATGTGGATTCGGATGGGAACCCCATCGGAGTGGTACAGATGACGTTCCTCAGGCTGCTGAGTGCCTCGGCCCACCAGAACATCACTTACAACTGCTACCAGTCCGTAGCCTGGCACGATGCCACCACTGACAGCTACGACAAGGCCATCCGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTACGACAACAACCCCTACATCCGAGCTGCATTCGATGGCTGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546_MULTIEX1-37/38=36-C2
Average complexity
ME(37-38[100=100])
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(10.4=100)
C2:
PF0141013=COLFI=FE(36.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGACTTGCATCTTCCCTG
R:
GTAGCTGTCAGTGGTGGCATC
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]