BtaEX0009715 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106862054-106871604:-
Coord C1 exon
chr11:106871492-106871604
Coord A exon
chr11:106865903-106865971
Coord C2 exon
chr11:106862054-106862287
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCCCTCGATGTTTAGGCC
3' ss Score
8.24
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCGAATACTGGGTGGATCCGAACCAAGGCTGCTCCCGGGACTCCTTCAAGGTCTACTGCAACTTCACGGCCGGGGGGTCAACGTGCGTCTTCCCCGACAAGAAGTCTGAAGGG
Seq A exon
GCCAGAATCACTTCTTGGCCCAAAGAAAACCCGGGTTCCTGGTTCAGTGAATTCAAGCGTGGCAAACTG
Seq C2 exon
CTCTCCTATGTGGACGCCGAGGGCAACCCCGTGGGCGTCGTCCAGATGACCTTCCTGCGGCTGCTCAGCGCCTCCGCCCACCAGAACATCACCTACAACTGCTACCAGTCGGTGGCCTGGCAGGACGCCGCCACGGGCAGCTATGACAAGGCCATGCGCTTCCTGGGCTCCAACGACGAGGAGATGTCATATGACAACAGCCCCTACATCCGCGCCCTGGTGGACGGCTGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'73-80,'73-78,74-80
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(10.4=100)
C2:
PF0141013=COLFI=FE(36.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGACTCCTTCAAGGTCTA
R:
GTAGGTGATGTTCTGGTGGGC
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development