Special

MmuALTA0017803-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59680067-59681325:+
Coord C1 exon
chr2:59680067-59680167
Coord A exon
chr2:59680752-59680755
Coord C2 exon
chr2:59680756-59681325
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TCTTATACTTTCATATGAAGGCA
3' ss Score
5.82
Exon sequences
Seq C1 exon
GACTTTGGTTTGGCAGAAGAATTTGCTTCAAAGGCTCTGGAATTGAAACCCAAATCCTACGAAGCCTTTTATGCCCGGGCGAGAGCAAAAAGGAACAGCAG
Seq A exon
GCAG
Seq C2 exon
TTCCTGGCAGCTCTGGCTGACCTGCAAGAGGCTGTGAAACTCTGTCCCAACAATCAGGAAATCAAGAGGCTCCTGGCCCGTGTTGAAGAAGAGTGCAAGCAACTCCAGAGGAACCAGCAGCAAAAGCAGCAGGGTCCCCCACCAGCTCCAGCCAATGACTCGGATAATGAGGAGGATGCGCCAGCCTCTAGTTTAAAGGACCACTTCCCCATTGAGGAGGCGGAAGAGGAAGACACCTCTTCACAGGAAGAGTCCATTTCCCCGACTCCCAGATCCCAGCCACCACCGTCTGTCCCTTCCCCATACATCCGCAACCTTCAAGAGGGATTACAGTCCAAAGGCAGGTCAGCATCCCCACAGAGCAGGGCAGGAATCAGCAAGTCCCTGAGAGAGACTGTAGCCCAGTCAGGCTTGGTTATGCAGCCTACCAAACAGGCACAGATAGTGAAGACCAACCAACATCTGGGTTCCGGGCAATCTAGCATGAGAAACAGTAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-46-37,46-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.866
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)

							
A:
NA

							
C2:
PF134281=TPR_14=PD(65.9=6.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000036003





     
                   









    
Main Skipping Isoform:
ENSMUSP00000097660





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000108187, ENSMUSP00000123345
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr2:160086087-160086088 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr2:37241170-37241171 
Chicken
(galGal4)
chr7:36028550-36028551 
HIGH PSI
GgaALTA1031661-2/2
(TANC1)
Chicken
(galGal3)
chr7:38164886-38164887 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TACGAAGCCTTTTATGCCCGG

				
R: 
TGGGACAGAGTTTCACAGCCT

				
Band lengths: 
93-97

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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