GgaALTA1031661-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:36027653-36028656:+
Coord C1 exon
chr7:36027653-36027753
Coord A exon
chr7:36028552-36028555
Coord C2 exon
chr7:36028556-36028656
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
CTGGTGTCTTTTTCATACAGAAA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GATTTTGGTTTGGCTGAAGAGTTCGCTACCAAAGCATTGGATTTAAAACCCAAGTCTTACGAAGCCTATTATGCTCGAGCAAGAGCAAAAAGGAACAGCAG
Seq A exon
AAAG
Seq C2 exon
CTACTTGCTGCTCTTGCTGACTTACATGAAGCCACAAAGTTGTGTCCTGGCAATCAAGAAATTAAACGTCTCCTGGCTCGAGTAGAAGAAGAATGTAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-36-45,36-44-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.873
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(20.0=47.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGCAAAAAGGAACAGCA
R:
ACTCGAGCCAGGAGACGTTTA
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]