BtaALTA0029521-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37241065-37241880:-
Coord C1 exon
chr2:37241780-37241880
Coord A exon
chr2:37241166-37241169
Coord C2 exon
chr2:37241065-37241165
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TTGTATCTTTTAAAATAAAGGCA
3' ss Score
2.74
Exon sequences
Seq C1 exon
GACTTCGGCATGGCGGAAGAATTTGCTTCCAAGGCCCTTGAGTTGAAACCAAAGTCCTACGAAGCCTTTTATGCCAGGGCGAGAGCCAAGAGAAGTAGCAG
Seq A exon
GCAG
Seq C2 exon
TTCGTGGCTGCCCTGGCTGACTTGCGGGAAGCAGTGAAGCTCTGTCCCGCCAACCAGGAGATCAGGCGGCTCCTGGCCCGCGTGGAGGAGGAGTGCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-46-49,46-48-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.890
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
A:
NA
C2:
PF134281=TPR_14=PD(65.9=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAAGCCTTTTATGCCAGGG
R:
GGGACAGAGCTTCACTGCTTC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development