Special

MmuEX0046400 @ mm9

Exon Skipping

Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:29990317-29992233:+
Coord C1 exon
chr2:29990317-29990390
Coord A exon
chr2:29990929-29991072
Coord C2 exon
chr2:29992193-29992233
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGAACTCCTGACAGCAT
3' ss Score
6.49
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCCATTGTGTTGGAAAAGCTTCGAGAACTCAGTTTTAGTG
Seq A exon
CATTGCAGAAGTTGGCCTTCCCATTCTGGAGTGGTGTGGAGGCCCCAGAGGGGAAGCTGCCTGTGCTGATTGTGCAGAGCTCGGACTGCACATCACACCTGTCTTAATCCTGGTTGCTCTGTCTACAGATCCGTGTCTTTATCT
Seq C2 exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678_MULTIEX1-1/5=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000120228





     
                   









    
Main Skipping Isoform:
ENSMUSP00000048426





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000120763
          









    
Other Skipping Isoforms:
ENSMUSP00000048426f4004A
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:131551732-131551836 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr11:99300065-99300267 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATTGCAGATTTCCAGGATGTCC

				
R: 
CTTCCAGCAGAGGCACCG

				
Band lengths: 
114-258

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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