MmuEX0046400 @ mm10
Exon Skipping
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:30134797-30136713:+
Coord C1 exon
chr2:30134797-30134870
Coord A exon
chr2:30135409-30135552
Coord C2 exon
chr2:30136673-30136713
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGAACTCCTGACAGCAT
3' ss Score
6.49
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCCATTGTGTTGGAAAAGCTTCGAGAACTCAGTTTTAGTG
Seq A exon
CATTGCAGAAGTTGGCCTTCCCATTCTGGAGTGGTGTGGAGGCCCCAGAGGGGAAGCTGCCTGTGCTGATTGTGCAGAGCTCGGACTGCACATCACACCTGTCTTAATCCTGGTTGCTCTGTCTACAGATCCGTGTCTTTATCT
Seq C2 exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678_MULTIEX1-1/5=C1-2
Average complexity
C1*
Mappability confidence:
83%=100=83%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCAGATTTCCAGGATGTCC
R:
CTTCCAGCAGAGGCACCG
Band lengths:
114-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types