MmuALTA0007869-3/4 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000064263 | Gm1631
Description
predicted gene 1631 [Source:MGI Symbol;Acc:MGI:2686477]
Coordinates
chr2:71557474-71561553:+
Coord C1 exon
chr2:71557474-71557565
Coord A exon
chr2:71561347-71561444
Coord C2 exon
chr2:71561445-71561553
Length
98 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TTGTTGTTGTTGACCAGAAGCAG
3' ss Score
-2.1
Exon sequences
Seq C1 exon
TTTCAGAGATGCAGTGACTCTGCCAGATGCTTCAGTGTCTCCCAGGAGGCAGGTTTTGCAGTGCATGGAGAGGAACCAGCTGGCAGAGAAAG
Seq A exon
CAGGTTCAAGCTCAAGCAGCAATCAGATCATGTAGAATGACCACAGCCAAATGCACAAGCCCATTTGAGAAGCAAGGGAATGTCTTGTGTGATCCCAG
Seq C2 exon
AATCCCAGGTCCCGGGAAGACAGAAATGTTGCTGAGACCCCGTGGCAGCTTGGGTTCAAGCAAGACAAAGCTGCAGCCAACAGGGCTGCCATCTTCTCACTCTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064263-0-3,0-2,0-1,0-0-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.543
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATGCTTCAGTGTCTCC
R:
GAGAAGATGGCAGCCCTGTTG
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: