MmuALTD0005795-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:32941395-32960543:-
Coord C1 exon
chr2:32960373-32960543
Coord A exon
NA
Coord C2 exon
chr2:32941395-32941464
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATGAAGCATTTTTGTTCCAGCTC
3' ss Score
4.98
Exon sequences
Seq C1 exon
CACAGCACCTCAGCCTCCAGGCCCACTGATGGATCCACTGACCAAGGGGTCCTGTGGGAGTCAGCTGGCACAAACCCTCCTCTGGAAAGCGAAGTCATCTCTCTCTTTCGGCATCCAGCCCCTTCAGACTTGGCCAACAAAAGATCCTGAACTAGAGTCCCAGGTCAACCT
Seq A exon
NA
Seq C2 exon
CTCTGTCTCAGAAGACCTAGGCTGTAGACGTGGGGATTTCAGTAGGAAGCATTATGGATCTGTGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-5-10,6-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGCCCCTTCAGACTTG
R:
AAATCCCCACGTCTACAGCCT
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: