Special

ENSG00000136895 @ hg19

Biotype
protein_coding
Gene Symbol
GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:25425]
Coordinates
chr9:129986544-130155939:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
70.69
59.03
0
Alternative 5'ss
4
chr9:130005529-130005532
+
29.31
59.03
0
Exon Skipping
98
chr9:129998073-129998170
+
11.5
41.09
0
Exon Skipping
121
chr9:129994609-129994729
+
18.91
63.04
0
Exon Skipping
70
chr9:130027231-130027300
+
88.62
36.43
1
Exon Skipping
77
chr9:130118708-130118784
+
0.63
7.37
1
Exon Skipping
188
chr9:130126868-130127055
+
8.83
49.21
0
Exon Skipping
112
chr9:130111203-130111314
+
73.66
87.8
0
Intron Retention
1063
chr9:130106619-130107681
+
8.76
34.55
0
Intron Retention
3446
chr9:130107757-130111202
+
13.36
57.25
0
Intron Retention
4810
chr9:130111315-130116124
+
15.68
59.17
0
Intron Retention
349
chr9:130116224-130116572
+
11.15
49.03
0
Intron Retention
7922
chr9:130119657-130127578
+
19.2
69.84
0
Intron Retention
2047
chr9:130147425-130149471
+
20.46
48.53
0
Intron Retention
1521
chr9:130151399-130152919
+
8.38
27.27
0
Intron Retention
7178
chr9:130087375-130094552
+
15.69
64.42
0
Intron Retention
673
chr9:130094629-130095301
+
8.43
32.83
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000038860 Garnl3 1-to-1
Mouse mm9 ENSMUSG00000038860 Garnl3 1-to-1
Rat rn6 ENSRNOG00000057044 Garnl3 1-to-1
Cow bosTau6 ENSBTAG00000006948 GARNL3 1-to-1
Chicken galGal4 ENSGALG00000000847 GARNL3 1-to-1
Chicken galGal3 ENSGALG00000000847 GARNL3 1-to-1
Zebrafish danRer10 ENSDARG00000060631 garnl3 1-to-1