HsaEX0027030 @ hg19
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:25425]
Coordinates
chr9:129987518-129998170:+
Coord C1 exon
chr9:129987518-129987682
Coord A exon
chr9:129994609-129994729
Coord C2 exon
chr9:129998073-129998170
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGTCTTTTTAAAAGACA
3' ss Score
5.76
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCGCGAGCCGAGCGGCCGGCCGAGGCCCGAGCCCACCCGAGTGCGCCCGAGCCCGCGGCCCCCGCCCGGGGCGATGGAACCGGAGCCCGGCGGGGTGGCCGCTGCGCTCCTGCGGCAGAAGAGGGCGGCGCTGCGGCGCAGGGGGTGCAGCTTCGAGAGCCCAAG
Seq A exon
ACAGATTCTCACTCTGTTGCCCAGGCTGGAGTACAGTGGCATGATCATAGCCCACTGCAGCCTTGAACTCCTGGGCTCGATGATCCTCCTGCCTCAGCCTCCTGAGTAGCTAGGACTACAG
Seq C2 exon
TGAGGGTGAAAATCTCACTGGACTGGCTTCAAGAGATAATGAGAGGAGATGATTGGAAACAACGACTACAGTCAACTCTTTGCACAGGTGGAGGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895-'3-6,'3-5,4-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCGATGGAACCGGAG
R:
ATTCCCTCCACCTGTGCAAAG
Band lengths:
196-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)