HsaEX0027027 @ hg19
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:25425]
Coordinates
chr9:129986750-130005528:+
Coord C1 exon
chr9:129986750-129986970
Coord A exon
chr9:129998073-129998170
Coord C2 exon
chr9:130005358-130005528
Length
98 bp
Sequences
Splice sites
3' ss Seq
AAACTGTTTCTTTGGAACAGTGA
3' ss Score
5.48
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AGAGCAGAACTGAGCAGGCGGTGGAGCTGGGTCTGGTCCGGGCACGGAGTGGGGGCTTCGAAGGGAAAAGGCGGGGCTCCTGGGGGCGGAGCCATACCTGTGGGCGGGACATGGGAAAGGAGGGCCCGAGGGGCGGAGCTACAATAGAAAGGGCCAGGAGGTGCTGAGGCGAGGAGAGGCCGAACTCCAAGGGACGACGCTCGCGGAAGCAGAGGTTTGGG
Seq A exon
TGAGGGTGAAAATCTCACTGGACTGGCTTCAAGAGATAATGAGAGGAGATGATTGGAAACAACGACTACAGTCAACTCTTTGCACAGGTGGAGGGAAT
Seq C2 exon
GACAGCTGCCCAGCCTCCAGGCCCACTGATGGACCCGTTAACGAAGGTGCCTTGTGGGAGTCAGATAGCACAAACCATTCTATGGAAAGCAAAGTCGTCTCTCTCCTTCGGCATCCAGCCCCTTCAGACATGGCCAACGAAAGACCCTGAACTAGAGTCCCAGGTCAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895-'2-7,'2-6,5-7
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.129
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCTGTGGGCGGGACATG
R:
CGTTAACGGGTCCATCAGTGG
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)