HsaEX0027027 @ hg38
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr9:127232350-127243249:+
Coord C1 exon
chr9:127232350-127232450
Coord A exon
chr9:127235794-127235891
Coord C2 exon
chr9:127243079-127243249
Length
98 bp
Sequences
Splice sites
3' ss Seq
AAACTGTTTCTTTGGAACAGTGA
3' ss Score
5.48
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CCAGGCTGGAGTACAGTGGCATGATCATAGCCCACTGCAGCCTTGAACTCCTGGGCTCGATGATCCTCCTGCCTCAGCCTCCTGAGTAGCTAGGACTACAG
Seq A exon
TGAGGGTGAAAATCTCACTGGACTGGCTTCAAGAGATAATGAGAGGAGATGATTGGAAACAACGACTACAGTCAACTCTTTGCACAGGTGGAGGGAAT
Seq C2 exon
GACAGCTGCCCAGCCTCCAGGCCCACTGATGGACCCGTTAACGAAGGTGCCTTGTGGGAGTCAGATAGCACAAACCATTCTATGGAAAGCAAAGTCGTCTCTCTCCTTCGGCATCCAGCCCCTTCAGACATGGCCAACGAAAGACCCTGAACTAGAGTCCCAGGTCAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895-'5-11,'5-10,6-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.104
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGATCCTCCTGCCTCAG
R:
CATGTCTGAAGGGGCTGGATG
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development