HsaEX1015241 @ hg38
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr9:127235794-127243253:+
Coord C1 exon
chr9:127235794-127235891
Coord A exon
chr9:127237153-127237521
Coord C2 exon
chr9:127243079-127243253
Length
369 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTGCTGTCTTCAGGAA
3' ss Score
10.8
5' ss Seq
GAAGTGGGT
5' ss Score
2.85
Exon sequences
Seq C1 exon
TGAGGGTGAAAATCTCACTGGACTGGCTTCAAGAGATAATGAGAGGAGATGATTGGAAACAACGACTACAGTCAACTCTTTGCACAGGTGGAGGGAAT
Seq A exon
GAAAGGAAAGCTGCCGCATCATGTCAAGAAGCTGATCAATCAAGAAGCAAGGAGATCCTGGCACCTTGACTAACTACAGACCCATGCTGCCGACTCTGCCTGGATCCCCAGAGCCACCACTGCTACTTCAGAAAGCTGGAGAATCAAGAAGCTGCTGACTCTAGAACCATGATACTCTTGTCACTGTCTGTAAAACCAGAACAATGCTTATATCCTCTCTTTTGCACCACTGACTCAGTTCCAAGTCAGAGTCTCTCATGAGTGCATCTGACTTGTGGAATCTAAATCACGTCCAGAACTCTACTACAAAGGAGTTGAGAACATTTAAGTTTTAGCTTTCCAACTTTTGCACAGTGGAAGGGGACTGAA
Seq C2 exon
GACAGCTGCCCAGCCTCCAGGCCCACTGATGGACCCGTTAACGAAGGTGCCTTGTGGGAGTCAGATAGCACAAACCATTCTATGGAAAGCAAAGTCGTCTCTCTCCTTCGGCATCCAGCCCCTTCAGACATGGCCAACGAAAGACCCTGAACTAGAGTCCCAGGTCAACCTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.104
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAATCTCACTGGACTGGCT
R:
AGGTTGACCTGGGACTCTAGT
Band lengths:
263-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains