Special

ENSG00000136895 @ hg38

Biotype
protein_coding
Gene Symbol
GARNL3
Description
GTPase activating Rap/RanGAP domain like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr9:127224265-127393660:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
68.19
56.97
0
Alternative 5'ss
4
chr9:127243250-127243253
+
31.81
56.97
0
Exon Skipping
98
chr9:127235794-127235891
+
10.98
41.99
0
Exon Skipping
105
chr9:127344235-127344339
+
98.76
25.71
0
Exon Skipping
139
chr9:127387193-127387331
+
95.61
100
0
Exon Skipping
70
chr9:127264952-127265021
+
90.37
33.88
1
Exon Skipping
77
chr9:127356429-127356505
+
0.68
8.33
1
Exon Skipping
119
chr9:127385027-127385145
+
95.46
26.64
0
Exon Skipping
75
chr9:127291168-127291242
+
97.84
26.39
0
Exon Skipping
188
chr9:127364589-127364776
+
9.6
51.19
0
Exon Skipping
112
chr9:127348924-127349035
+
76.21
74.42
0
Exon Skipping
99
chr9:127353846-127353944
+
96.93
15.79
0
Exon Skipping
369
chr9:127237153-127237521
+
40.42
9.11
0
Exon Skipping
75
chr9:127345403-127345477
+
98.85
32.26
0
Intron Retention
1063
chr9:127344340-127345402
+
10.02
42
0
Intron Retention
3446
chr9:127345478-127348923
+
16.32
61.41
0
Intron Retention
4810
chr9:127349036-127353845
+
15.76
59.17
0
Intron Retention
349
chr9:127353945-127354293
+
13.63
63.71
0
Intron Retention
7922
chr9:127357378-127365299
+
19.95
69.84
0
Intron Retention
18071
chr9:127365367-127383437
+
11.86
39.26
0
Intron Retention
1481
chr9:127383546-127385026
+
10.39
50
0
Intron Retention
3758
chr9:127385146-127388903
+
82.98
32.75
0
Intron Retention
1521
chr9:127389120-127390640
+
7.9
34.38
0
Intron Retention
7178
chr9:127325096-127332273
+
18.56
64.74
0
Intron Retention
673
chr9:127332350-127333022
+
8.66
32.83
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000038860 Garnl3 1-to-1
Mouse mm9 ENSMUSG00000038860 Garnl3 1-to-1
Rat rn6 ENSRNOG00000057044 Garnl3 1-to-1
Cow bosTau6 ENSBTAG00000006948 GARNL3 1-to-1
Chicken galGal4 ENSGALG00000000847 GARNL3 1-to-1
Chicken galGal3 ENSGALG00000000847 GARNL3 1-to-1
Zebrafish danRer10 ENSDARG00000060631 garnl3 1-to-1